COVID-19 Data (Repository that stores datasets used in different CEID projects)
type: DataCatalog
id: https://w3id.org/midas-catalog/126
description: The datasets in the repository were compiled by members of the CEID COVID-19 working group. Datasets include data on COVID-19 around the world, in China, in the United States, and in the state of Georgia. Data on COVID-19 include cases (cases by country), mobility reports, deaths, interventions, other variables/points of interests related to COVID-19. The data at the top level of the repository have been formated to be used 'as-is' and are updated often. Data sets were either created from html scraping or manually entered.
source: https://w3id.org/midas-catalog/126
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subject: viral Infectious disease
subject: gender identity information content entity
subject: modeling
subject: age-stratified
subject: http://purl.obolibrary.org/obo/OMRSE_00000205
subject: host organism
subject: school closure control strategy census
subject: http://purl.obolibrary.org/obo/DOID_4
subject: http://purl.obolibrary.org/obo/OMRSE_00000209
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subject: viral respiratory tract infection
subject: http://purl.obolibrary.org/obo/APOLLO_SV_00000237
subject: http://purl.obolibrary.org/obo/APOLLO_SV_00000159
subject: control strategy census
subject: repository
subject: http://w3id.org/midas-metadata/midas94
subject: COVID-19
subject: parameter estimation
subject: hospital stay dataset
subject: http://purl.obolibrary.org/obo/IDO_0000436
subject: http://purl.obolibrary.org/obo/APOLLO_SV_00000607
subject: diagnostic tests
subject: mortality data
subject: ethnic identity information content entity
subject: Homo sapiens
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subject: http://purl.obolibrary.org/obo/APOLLO_SV_00000602
subject: population
subject: http://purl.obolibrary.org/obo/MONDO_0024352
subject: Severe acute respiratory syndrome coronavirus 2
subject: pathogen
subject: vaccine-preventable Disease
subject: health system capacity
subject: http://purl.obolibrary.org/obo/OMRSE_00000213
subject: vaccination
subject: http://purl.obolibrary.org/obo/MONDO_0005108
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subject: http://purl.obolibrary.org/obo/NCBITaxon_10239
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subject: Viruses
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subject: http://purl.obolibrary.org/obo/APOLLO_SV_00000142
subject: http://purl.obolibrary.org/obo/APOLLO_SV_00000542
subject: human daily movement data set
subject: behavior
subject: racial identity information content entity
subject: infection case list
subject: vaccination administration census
subject: disease
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subject: forecasting
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subject: http://w3id.org/midas-metadata/midas67
subject: population demographic census
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subject: infectious disease
subject: http://purl.obolibrary.org/obo/APOLLO_SV_00000397
subject: http://w3id.org/midas-metadata/midas6
subject: Population count
subject: modeling purpose
access URL: https://github.com/CEIDatUGA/COVID-19-DATA
landing page: https://github.com/CEIDatUGA/COVID-19-DATA
endpoint URL: https://github.com/CEIDatUGA/COVID-19-DATA
abstract: Landing page where users can browse and download dataset files in various formats.
endpoint description: Landing page where users can browse and download dataset files in various formats.
language: English
language: https://id.loc.gov/vocabulary/iso639-2/eng

CEID (Center for the Ecology of Infectious Diseases at University of Georgia (UGA)) COVID-19 working group
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type: Agent

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display name: Pathogen

health system capacity
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description: Information about capacity, including hospital beds, PPE supplies, nursing home capacity, testing sites, therapeutics, etc.
display name: Health System Capacity

Severe acute respiratory syndrome coronavirus 2
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id: http://purl.obolibrary.org/obo/NCBITaxon_2697049
description: A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.
display name: SARS-CoV2

COVID-19
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description: A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.
display name: COVID-19

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display name: Parameter Estimation

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display name: Vaccination

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display name: Viruses Infection

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display name: Forecasting

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description: A social identity information content entity that is about whether some person identifies as some race.
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viral respiratory tract infection
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description: A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.
display name: Viral Respiratory Tract Infection

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description: a population treatment census that is about one or more vaccinations of organisms in a population
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school closure control strategy census
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display name: Human Movement

vaccine-preventable Disease
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display name: Vaccine-Preventable Disease

modeling
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diagnostic tests
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description: Information about diagnostic tests, results, including serology tests, PCR, and other tests
display name: Tests

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description: A count of simulated or physical individuals in a population.
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ethnic identity information content entity
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display name: Ethnicity

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description: Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.
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behavior
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gender identity information content entity
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mortality data
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display name: Mortality

control strategy census
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description: a census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem.
display name: Control Strategy

COVID-19
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id: http://purl.obolibrary.org/obo/DOID_0080600
description: A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.
display name: COVID-19

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id: http://purl.obolibrary.org/obo/APOLLO_SV_00000238
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display name: Host

hospital stay dataset
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description: a dataset that is about two or more hospital stays involving two or more patients.
display name: Hospitalization

population demographic census
type: DefinedTerm
id: http://purl.obolibrary.org/obo/APOLLO_SV_00000159
description: A census that is the specific outcome of a population demographic survey.
display name: Population Demographic

datePublished
date: 2022-08-30

datePublished
date: 2021-05-26

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GNU GPL v3
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source: http://www.ebi.ac.uk/swo/license/SWO_1000046

National Institute of General Medical Sciences
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Country
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type: dct:Standard
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PROV Ontology
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description: W3C Provenance Ontology for describing provenance information
subject areas: sciences
subject areas: epidemiology
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PAV Ontology
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GeoNames Ontology
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subject areas: epidemiology
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control strategy census
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id: http://purl.obolibrary.org/obo/APOLLO_SV_00000604
description: a census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem.
display name: Control Strategy

vaccination administration census
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id: http://purl.obolibrary.org/obo/APOLLO_SV_00000607
description: a population treatment census that is about one or more vaccinations of organisms in a population
display name: Vaccination Administration

age-stratified
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description: Population data divided by age ranges
display name: Age-Stratified

disease
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id: http://purl.obolibrary.org/obo/DOID_4
description: A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
display name: Disease

mortality data
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id: http://purl.obolibrary.org/obo/APOLLO_SV_00000542
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diagnostic tests
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description: Information about diagnostic tests, results, including serology tests, PCR, and other tests
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pathogen
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id: http://purl.obolibrary.org/obo/APOLLO_SV_00000237
description: An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.
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repository
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vaccine-preventable Disease
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display name: Vaccine-Preventable Disease

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display name: Viruses

COVID-19
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infection case list
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Severe acute respiratory syndrome coronavirus 2
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description: A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.
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human daily movement data set
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population
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COVID-19
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ethnic identity information content entity
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display name: Ethnicity

gender identity information content entity
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id: http://purl.obolibrary.org/obo/OMRSE_00000209
description: A social identity information content entity that is about whether some person identifies as some gender.
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infectious disease
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Homo sapiens
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population demographic census
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id: http://purl.obolibrary.org/obo/APOLLO_SV_00000159
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forecasting
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health system capacity
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hospital stay dataset
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description: a dataset that is about two or more hospital stays involving two or more patients.
display name: Hospitalization

racial identity information content entity
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id: http://purl.obolibrary.org/obo/OMRSE_00000213
description: A social identity information content entity that is about whether some person identifies as some race.
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behavior
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id: http://w3id.org/midas-metadata/midas79
description: Actions of groups of people in response to outbreaks.
display name: Behavior

school closure control strategy census
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id: http://purl.obolibrary.org/obo/APOLLO_SV_00000605
description: an infectious disease control strategy census that is about school closure infectious disease control strategies implemented in a particular geographical region.
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viral respiratory tract infection
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id: http://purl.obolibrary.org/obo/MONDO_0024352
description: A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.
display name: Viral Respiratory Tract Infection

vaccination
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id: http://purl.obolibrary.org/obo/APOLLO_SV_00000142
description: A treatment that consists of the administration of antigenic material to stimulate an individual's immune system to develop adaptive immunity to a pathogen.
display name: Vaccination

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