Coronavirus COVID-19 (2019-nCoV) Data Repository and Dashboard for South Africa
This is a repository for COVID-19 in South Africa containing datasets on testing, cases, recoveries, deaths, transmission types, vaccination and hospital surveillance data. It also contains Jupyter notebooks with analysis and visualization code, forecasting modeling for COVID-19. The repository also stores python scrips for data processing and scraper. The code is licensed under the MIT license.
Schema.org vocabulary for structured data on the web
A structured data markup specification for describing datasets in the life sciences, extending schema.org Dataset
Dublin Core Metadata Initiative Terms - refined elements for precise resource description
W3C Data Catalog Vocabulary for describing data catalogs
DataCite metadata schema for research data citation
W3C Provenance Ontology for describing provenance information
Provenance, Authoring and Versioning ontology for metadata about web resources
Custom MIDAS vocabulary for epidemiological data and modeling
OBO Foundry ontologies for life sciences and biomedical research
Health Level 7 Fast Healthcare Interoperability Resources
Systematized Nomenclature of Medicine Clinical Terms
Logical Observation Identifiers Names and Codes
LOINC database for laboratory and clinical observations
JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records
a population treatment census that is about one or more vaccinations of organisms in a population
Tools for initial stages of data processing, usually prior to modeling. Includes pre-processing, cleaning, exploratory analysis.
A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.
A count of hospital stays in a population that is the number of hospital stays that occurred during a proper part of a reference temporal interval.
A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.
The method or type of model used to achieve the purpose.
A service that has some information content entity as input and output.
A count of recovery in a population that is the total number of recovery that occur during a reference temporal interval
gender identity information content entity
A social identity information content entity that is about whether some person identifies as some gender.
Projections of outbreak behavior into some future time, determined relative to a defined starting point. Might include retrospective projects or projections for current activitiy (known as "now-casting").
A count of disease cases that is the total number of individuals who come to meet the criteria of some case definition during a reference temporal interval.
A disease whose physical basis is an infectious disorder
A count of individuals in a population who meet the criteria of some case definition during some time interval.
A data set that is a collection of case records
Severe acute respiratory syndrome coronavirus 2
A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.
A count of deaths in a population that is the total number of deaths that occur during a reference temporal interval.
a statistical model is an information content entity which is a formalization of relationships between variables in the form of mathematical equations. A statistical model describes how one or more random variables are related to one or more other variables. The model is statistical as the variables are not deterministically but stochastically related.
a dataset that is about two or more hospital stays involving two or more patients.
a census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem.
A census that counts the number of treatment facilities of some kind in a particular geographical region.
Computer methods for creating images, diagrams or animations.
Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination
Information about capacity, including hospital beds, PPE supplies, nursing home capacity, testing sites, therapeutics, etc.
A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.
An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.
Information about diagnostic tests, results, including serology tests, PCR, and other tests
A collection of information in various types of structured or non-structured formats.
A population mortality dataset that compares deaths in the population during one time interval to deaths in the population during a previous time interval and reports an estimate of how many more or less deaths occurred in the later time interval.
A treatment that consists of the administration of antigenic material to stimulate an individual's immune system to develop adaptive immunity to a pathogen.
Actions of groups of people in response to outbreaks.
A count of simulated or physical individuals in a population.
An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.
A count of vaccinations in a population that is the total number of a given type of vaccines administered during a reference temporal interval.
A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
Descriptors of the behavior of an outbreak
A count of recovery that occured in a population in a given temporal region
a data set that is about the human daily movement behavior of the individual huamns in a given population.
Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.
A Bayesian model is a statistical model where inference is based on using Bayes theorem to obtain a posterior distribution for a quantity (or quantities) of interest for some model (such as parameter values) based on some prior distribution for the relevant unknown parameters and the likelihood from the model.
The goal or purpose of a modeling study.
A census that is the specific outcome of a population demographic survey.
Landing page where users can browse and download dataset files in various formats.
Data Science for Social Impact Research Group at University of Pretoria
National Institute of General Medical Sciences
Dr. Vukosi Marivate, Herkulaas Combrink, Data Science for Social Impact Research Group at University of Pretoria. Coronavirus COVID-19 (2019-nCoV) Data Repository and Dashboard for South Africa. 2021. Available from: https://github.com/dsfsi/covid19za
The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability