Coronavirus COVID-19 (2019-nCoV) Data Repository and Dashboard for South Africa
type: DataCatalog
description: This is a repository for COVID-19 in South Africa containing datasets on testing, cases, recoveries, deaths, transmission types, vaccination and hospital surveillance data. It also contains Jupyter notebooks with analysis and visualization code, forecasting modeling for COVID-19. The repository also stores python scrips for data processing and scraper. The code is licensed under the MIT license.
conforms to: Schema.org
conforms to: Bioschemas Dataset Profile
conforms to: DCMI Metadata Terms
conforms to: Data Catalog Vocabulary
conforms to: DataCite Metadata Schema
conforms to: PROV Ontology
conforms to: PAV Ontology
conforms to: MIDAS Metadata Vocabulary
conforms to: Open Biological and Biomedical Ontology
conforms to: GeoNames Ontology
conforms to: HL7 FHIR
conforms to: SNOMED Clinical Terms
conforms to: Logical Observation Identifiers Names and Codes
conforms to: MIDAS Catalog JSON-LD Schema
included in data catalog: MIDAS Catalog
about: population
about: vaccination administration census
about: data preparation
about: COVID-19
about: incident hospitalization count
about: mortality data
about: modeling method
about: data service
about: cumulative recovered count
about: gender identity information content entity
about: forecasting
about: cumulative case count
about: viral Infectious disease
about: infectious disease
about: count of disease cases
about: infection case list
about: Severe acute respiratory syndrome coronavirus 2
about: cumulative death count
about: statistical model
about: hospital stay dataset
about: control strategy census
about: treatment facility census
about: Graphics Visualization
about: vaccine-preventable Disease
about: health system capacity
about: viral respiratory tract infection
about: host organism
about: diagnostic tests
about: repository
about: age-stratified
about: excess mortality dataset
about: vaccination
about: behavior
about: Population count
about: pathogen
about: cumulative vaccination count
about: disease
about: modeling
about: count of recovered in a population
about: human daily movement data set
about: Viruses
about: Bayesian model
about: modeling purpose
about: Homo sapiens
about: population demographic census
subject: viral Infectious disease
subject: Bayesian model
subject: Population count
subject: Graphics Visualization
subject: disease
subject: gender identity information content entity
subject: host organism
subject: Viruses
subject: data service
subject: repository
subject: pathogen
subject: behavior
subject: population demographic census
subject: diagnostic tests
subject: Homo sapiens
subject: vaccine-preventable Disease
subject: age-stratified
subject: vaccination

Schema.org
type: Standard
description: Schema.org vocabulary for structured data on the web
subject: sciences
subject: web
type: generic

Bioschemas Dataset Profile
type: Standard
description: A structured data markup specification for describing datasets in the life sciences, extending schema.org Dataset
subject: bioinformatics
subject: life sciences
subject: structured data
type: metadata schema

DCMI Metadata Terms
type: Standard
description: Dublin Core Metadata Initiative Terms - refined elements for precise resource description
subject: metadata
subject: resource description
subject: interoperability
subject: digital libraries
type: metadata schema

Data Catalog Vocabulary
type: Standard
description: W3C Data Catalog Vocabulary for describing data catalogs
subject: sciences
subject: data management
type: generic

DataCite Metadata Schema
type: Standard
description: DataCite metadata schema for research data citation
subject: research data
subject: data citation
type: domain-specific

PROV Ontology
type: Standard
description: W3C Provenance Ontology for describing provenance information
subject: sciences
subject: epidemiology
type: generic

PAV Ontology
type: Standard
description: Provenance, Authoring and Versioning ontology for metadata about web resources
subject: provenance
subject: versioning
subject: authoring
subject: metadata
type: metadata schema

MIDAS Metadata Vocabulary
type: Standard
description: Custom MIDAS vocabulary for epidemiological data and modeling
subject: epidemiology
subject: public health
subject: infectious diseases
type: domain-specific

Open Biological and Biomedical Ontology
type: Standard
description: OBO Foundry ontologies for life sciences and biomedical research
subject: life sciences
subject: biomedical
subject: epidemiology
type: domain-specific

GeoNames Ontology
type: Standard
description: GeoNames geographical database ontology
subject: geography
subject: spatial data
type: domain-specific

HL7 FHIR
type: Standard
description: Health Level 7 Fast Healthcare Interoperability Resources
subject: healthcare
subject: medical informatics
type: domain-specific

SNOMED Clinical Terms
type: Standard
description: Systematized Nomenclature of Medicine Clinical Terms
subject: healthcare
subject: clinical terminology
type: domain-specific

Logical Observation Identifiers Names and Codes
type: Standard
description: LOINC database for laboratory and clinical observations
subject: healthcare
subject: laboratory
subject: clinical
type: domain-specific

MIDAS Catalog JSON-LD Schema
type: Standard
description: JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records
subject: epidemiology
subject: metadata
subject: data validation
type: metadata schema

population
type: DefinedTerm
alternate name: Population

vaccination administration census
type: DefinedTerm
description: a population treatment census that is about one or more vaccinations of organisms in a population
alternate name: Vaccination Administration

data preparation
type: DefinedTerm
description: Tools for initial stages of data processing, usually prior to modeling. Includes pre-processing, cleaning, exploratory analysis.
alternate name: Data Preparation

COVID-19
type: DefinedTerm
description: A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.
alternate name: COVID-19

incident hospitalization count
type: DefinedTerm
description: A count of hospital stays in a population that is the number of hospital stays that occurred during a proper part of a reference temporal interval.
alternate name: Incident Hospitalization

mortality data
type: DefinedTerm
description: A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.
alternate name: Mortality

modeling method
type: DefinedTerm
description: The method or type of model used to achieve the purpose.
alternate name: Modeling Method

data service
type: DefinedTerm
description: A service that has some information content entity as input and output.
alternate name: Data Service

cumulative recovered count
type: DefinedTerm
description: A count of recovery in a population that is the total number of recovery that occur during a reference temporal interval
alternate name: Cumulative Recovered Count

gender identity information content entity
type: DefinedTerm
description: A social identity information content entity that is about whether some person identifies as some gender.
alternate name: Gender

forecasting
type: DefinedTerm
description: Projections of outbreak behavior into some future time, determined relative to a defined starting point. Might include retrospective projects or projections for current activitiy (known as "now-casting").
alternate name: Forecasting

cumulative case count
type: DefinedTerm
description: A count of disease cases that is the total number of individuals who come to meet the criteria of some case definition during a reference temporal interval.
alternate name: Cumulative Case Count

viral Infectious disease
type: DefinedTerm
description: Any disease caused by a virus.
alternate name: Viruses Infection

infectious disease
type: DefinedTerm
description: A disease whose physical basis is an infectious disorder
alternate name: Infectious Disease

count of disease cases
type: DefinedTerm
description: A count of individuals in a population who meet the criteria of some case definition during some time interval.
alternate name: Case Count

infection case list
type: DefinedTerm
description: A data set that is a collection of case records
alternate name: Infection Case List

Severe acute respiratory syndrome coronavirus 2
type: DefinedTerm
description: A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.
alternate name: SARS-CoV2

cumulative death count
type: DefinedTerm
description: A count of deaths in a population that is the total number of deaths that occur during a reference temporal interval.
alternate name: Cumulative Death Count

statistical model
type: DefinedTerm
description: a statistical model is an information content entity which is a formalization of relationships between variables in the form of mathematical equations. A statistical model describes how one or more random variables are related to one or more other variables. The model is statistical as the variables are not deterministically but stochastically related.
alternate name: Statistical Model

hospital stay dataset
type: DefinedTerm
description: a dataset that is about two or more hospital stays involving two or more patients.
alternate name: Hospitalization

control strategy census
type: DefinedTerm
description: a census of infectious disease control strategies put into place to reduce infection acquisitions that are part of an infection in an ecosystem.
alternate name: Control Strategy

treatment facility census
type: DefinedTerm
description: A census that counts the number of treatment facilities of some kind in a particular geographical region.
alternate name: Treatment Facility

Graphics Visualization
type: DefinedTerm
description: Computer methods for creating images, diagrams or animations.
alternate name: Graphics Visualization

vaccine-preventable Disease
type: DefinedTerm
description: Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination
alternate name: Vaccine-Preventable Disease

health system capacity
type: DefinedTerm
description: Information about capacity, including hospital beds, PPE supplies, nursing home capacity, testing sites, therapeutics, etc.
alternate name: Health System Capacity

viral respiratory tract infection
type: DefinedTerm
description: A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.
alternate name: Viral Respiratory Tract Infection

host organism
type: DefinedTerm
description: An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.
alternate name: Host

diagnostic tests
type: DefinedTerm
description: Information about diagnostic tests, results, including serology tests, PCR, and other tests
alternate name: Tests

repository
type: DefinedTerm
description: A collection of information in various types of structured or non-structured formats.
alternate name: Repository

age-stratified
type: DefinedTerm
description: Population data divided by age ranges
alternate name: Age-Stratified

excess mortality dataset
type: DefinedTerm
description: A population mortality dataset that compares deaths in the population during one time interval to deaths in the population during a previous time interval and reports an estimate of how many more or less deaths occurred in the later time interval.
alternate name: Excess Mortality

vaccination
type: DefinedTerm
description: A treatment that consists of the administration of antigenic material to stimulate an individual's immune system to develop adaptive immunity to a pathogen.
alternate name: Vaccination

behavior
type: DefinedTerm
description: Actions of groups of people in response to outbreaks.
alternate name: Behavior

Population count
type: DefinedTerm
description: A count of simulated or physical individuals in a population.
alternate name: Population Count

pathogen
type: DefinedTerm
description: An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.
alternate name: Pathogen

cumulative vaccination count
type: DefinedTerm
description: A count of vaccinations in a population that is the total number of a given type of vaccines administered during a reference temporal interval.
alternate name: Cumulative Vaccination

disease
type: DefinedTerm
description: A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
alternate name: Disease

modeling
type: DefinedTerm
description: Descriptors of the behavior of an outbreak
alternate name: Modeling

count of recovered in a population
type: DefinedTerm
description: A count of recovery that occured in a population in a given temporal region
alternate name: Recovery Count

human daily movement data set
type: DefinedTerm
description: a data set that is about the human daily movement behavior of the individual huamns in a given population.
alternate name: Human Movement

Viruses
type: DefinedTerm
description: Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.
alternate name: Viruses

Bayesian model
type: DefinedTerm
description: A Bayesian model is a statistical model where inference is based on using Bayes theorem to obtain a posterior distribution for a quantity (or quantities) of interest for some model (such as parameter values) based on some prior distribution for the relevant unknown parameters and the likelihood from the model.
alternate name: Bayesian Model

modeling purpose
type: DefinedTerm
description: The goal or purpose of a modeling study.
alternate name: Modeling Purpose

Homo sapiens
type: DefinedTerm
description: Members of the species Homo sapiens.
alternate name: Homo sapiens

population demographic census
type: DefinedTerm
description: A census that is the specific outcome of a population demographic survey.
alternate name: Population Demographic

English
type: Language

Data Science for Social Impact Research Group at University of Pretoria
type: Person
type: Agent

Herkulaas Combrink
type: Person
type: Agent

Dr. Vukosi Marivate
type: Person
type: Agent

Apache 2.0
type: CreativeWork

CC BY-SA 4.0
type: CreativeWork

National Institute of General Medical Sciences
type: Organization

MIDAS COORDINATION CENTER
type: Organization
location: PostalAddress
  street address: 5607 Baum Blvd
  address locality: Pittsburgh
  address region: PA
  address country: United States of America
  postal code: 15206

Place
geo: Republic of South Africa
feature code: PCLI

Republic of South Africa
type: GeoShape
address country: ZA

District
type: Place

Province
type: Place

COVID 19 ZA South Africa Dashboard
type: CreativeWork
description: related dashboard
type: Entity
property value: URL
type: Agent

about-property-structure
type: PropertyValue
description: The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability