Projection of COVID-19 Cases and Deaths in the United States
type: DataCatalog
description: The repository contains the code and the model output for county-level U.S. COVID-19 projections cases and deaths as states reopen back up. Projections are generated for daily new confirmed case, daily new infection (both reported and unreported), cumulative demand of hospital beds, ICU and ventilators as well as daily mortality (2.5, 25, 50, 75 and 97.5 percentiles).
conforms to: Schema.org
conforms to: Bioschemas Dataset Profile
conforms to: DCMI Metadata Terms
conforms to: Data Catalog Vocabulary
conforms to: DataCite Metadata Schema
conforms to: PROV Ontology
conforms to: PAV Ontology
conforms to: MIDAS Metadata Vocabulary
conforms to: Open Biological and Biomedical Ontology
conforms to: GeoNames Ontology
conforms to: HL7 FHIR
conforms to: SNOMED Clinical Terms
conforms to: Logical Observation Identifiers Names and Codes
conforms to: MIDAS Catalog JSON-LD Schema
included in data catalog: MIDAS Catalog
about: modeling output
about: hospital stay dataset
about: infectious disease
about: count of disease cases
about: vaccine-preventable Disease
about: Homo sapiens
about: host organism
about: modeling purpose
about: COVID-19
about: disease
about: modeling method
about: viral respiratory tract infection
about: population
about: incident death count
about: pathogen
about: Viruses
about: parameter estimation
about: Severe acute respiratory syndrome coronavirus 2
about: repository
about: mortality data
about: cumulative hospitalization count
about: Population count
about: count of infections in a population
about: modeling
about: viral Infectious disease
about: incident infection count
about: health system capacity
about: incident case count
about: scenario analysis
about: compartmental models
subject: viral Infectious disease
subject: Population count
subject: disease
subject: host organism
subject: Viruses
subject: pathogen
subject: repository
subject: Homo sapiens
subject: vaccine-preventable Disease
subject: modeling output
subject: mortality data
subject: scenario analysis
subject: infectious disease
subject: count of infections in a population
subject: Severe acute respiratory syndrome coronavirus 2
subject: hospital stay dataset
subject: cumulative hospitalization count
subject: health system capacity
subject: incident infection count
subject: parameter estimation
subject: incident case count
subject: compartmental models
subject: incident death count
subject: viral respiratory tract infection
subject: population
subject: modeling purpose
subject: count of disease cases
subject: COVID-19
subject: modeling method
subject: modeling
access URL: https://github.com/shaman-lab/COVID-19Projection
landing page: https://github.com/shaman-lab/COVID-19Projection
endpoint URL: https://github.com/shaman-lab/COVID-19Projection

Schema.org
type: Standard
description: Schema.org vocabulary for structured data on the web
subject: sciences
subject: web
type: generic

Bioschemas Dataset Profile
type: Standard
description: A structured data markup specification for describing datasets in the life sciences, extending schema.org Dataset
subject: bioinformatics
subject: life sciences
subject: structured data
type: metadata schema

DCMI Metadata Terms
type: Standard
description: Dublin Core Metadata Initiative Terms - refined elements for precise resource description
subject: metadata
subject: resource description
subject: interoperability
subject: digital libraries
type: metadata schema

Data Catalog Vocabulary
type: Standard
description: W3C Data Catalog Vocabulary for describing data catalogs
subject: sciences
subject: data management
type: generic

DataCite Metadata Schema
type: Standard
description: DataCite metadata schema for research data citation
subject: research data
subject: data citation
type: domain-specific

PROV Ontology
type: Standard
description: W3C Provenance Ontology for describing provenance information
subject: sciences
subject: epidemiology
type: generic

PAV Ontology
type: Standard
description: Provenance, Authoring and Versioning ontology for metadata about web resources
subject: provenance
subject: versioning
subject: authoring
subject: metadata
type: metadata schema

MIDAS Metadata Vocabulary
type: Standard
description: Custom MIDAS vocabulary for epidemiological data and modeling
subject: epidemiology
subject: public health
subject: infectious diseases
type: domain-specific

Open Biological and Biomedical Ontology
type: Standard
description: OBO Foundry ontologies for life sciences and biomedical research
subject: life sciences
subject: biomedical
subject: epidemiology
type: domain-specific

GeoNames Ontology
type: Standard
description: GeoNames geographical database ontology
subject: geography
subject: spatial data
type: domain-specific

HL7 FHIR
type: Standard
description: Health Level 7 Fast Healthcare Interoperability Resources
subject: healthcare
subject: medical informatics
type: domain-specific

SNOMED Clinical Terms
type: Standard
description: Systematized Nomenclature of Medicine Clinical Terms
subject: healthcare
subject: clinical terminology
type: domain-specific

Logical Observation Identifiers Names and Codes
type: Standard
description: LOINC database for laboratory and clinical observations
subject: healthcare
subject: laboratory
subject: clinical
type: domain-specific

MIDAS Catalog JSON-LD Schema
type: Standard
description: JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records
subject: epidemiology
subject: metadata
subject: data validation
type: metadata schema

modeling output
type: DefinedTerm
description: The output of a model
alternate name: Modeling Output

hospital stay dataset
type: DefinedTerm
description: a dataset that is about two or more hospital stays involving two or more patients.
alternate name: Hospitalization

infectious disease
type: DefinedTerm
description: A disease whose physical basis is an infectious disorder
alternate name: Infectious Disease

count of disease cases
type: DefinedTerm
description: A count of individuals in a population who meet the criteria of some case definition during some time interval.
alternate name: Case Count

vaccine-preventable Disease
type: DefinedTerm
description: Vaccine preventable diseases are those infectious diseases that can be prevented by vaccination
alternate name: Vaccine-Preventable Disease

Homo sapiens
type: DefinedTerm
description: Members of the species Homo sapiens.
alternate name: Homo sapiens

host organism
type: DefinedTerm
description: An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.
alternate name: Host

modeling purpose
type: DefinedTerm
description: The goal or purpose of a modeling study.
alternate name: Modeling Purpose

COVID-19
type: DefinedTerm
description: A Coronavirus infection that is characterized by fever, cough and shortness of breath and that has_material_basis_in SARS-CoV-2.
alternate name: COVID-19

disease
type: DefinedTerm
description: A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
alternate name: Disease

modeling method
type: DefinedTerm
description: The method or type of model used to achieve the purpose.
alternate name: Modeling Method

viral respiratory tract infection
type: DefinedTerm
description: A respiratory tract infection caused by a virus. Viruses represent the most common causes of upper and lower respiratory tract infections and include rhinoviruses, influenza viruses, parainfluenza viruses, and respiratory syncytial virus.
alternate name: Viral Respiratory Tract Infection

population
type: DefinedTerm
alternate name: Population

incident death count
type: DefinedTerm
description: A count of deaths in a population that is the number of deaths that occurred during a proper part of a reference temporal interval.
alternate name: Incident Death Count

pathogen
type: DefinedTerm
description: An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.
alternate name: Pathogen

Viruses
type: DefinedTerm
description: Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.
alternate name: Viruses

parameter estimation
type: DefinedTerm
description: Predicted value of key outbreak parameters, including (but not limited to) fatality rate, R_0, etc.
alternate name: Parameter Estimation

Severe acute respiratory syndrome coronavirus 2
type: DefinedTerm
description: A species of BETACORONAVIRUS causing atypical respiratory disease (COVID-19) in humans. The organism was first identified in 2019 in Wuhan, China. The natural host is the Chinese intermediate horseshoe bat, RHINOLOPHUS affinis.
alternate name: SARS-CoV2

repository
type: DefinedTerm
description: A collection of information in various types of structured or non-structured formats.
alternate name: Repository

mortality data
type: DefinedTerm
description: A data set that is about either some mortality rate or the death events themselves of some individuals of a given population of a particular biological taxon.
alternate name: Mortality

cumulative hospitalization count
type: DefinedTerm
description: A count of hospital stays in a population that is the total number of hospitalizations that occur during a reference temporal interval.
alternate name: Cumulative Hospitalization

Population count
type: DefinedTerm
description: A count of simulated or physical individuals in a population.
alternate name: Population Count

count of infections in a population
type: DefinedTerm
description: A count of infections (process) that occurred in a population in a given temporal region.
alternate name: Infection Count

modeling
type: DefinedTerm
description: Descriptors of the behavior of an outbreak
alternate name: Modeling

viral Infectious disease
type: DefinedTerm
description: Any disease caused by a virus.
alternate name: Viruses Infection

incident infection count
type: DefinedTerm
description: A count of infections in a population that is the number of infections of a given type that occurred during a proper occurrent part of a reference temporal interval.
alternate name: Incident Infection Count

health system capacity
type: DefinedTerm
description: Information about capacity, including hospital beds, PPE supplies, nursing home capacity, testing sites, therapeutics, etc.
alternate name: Health System Capacity

incident case count
type: DefinedTerm
description: A count of cases in a population that is the number of individuals who come to meet the criteria of some case definition during a proper part of a reference temporal interval.
alternate name: Incident Case Count

scenario analysis
type: DefinedTerm
description: A method that tries to describe logical and internally consistent sequences of events to explore how the future might, could or should evolve from the past and present.
alternate name: Scenario Analysis

compartmental models
type: DefinedTerm
description: Forecasts based on SIR (Susceptible, Infected, Recovered) models or any of the many variants of this basic famework.
alternate name: Compartmental Models

English
type: Language

Jeffery Shaman
type: Person
type: Agent

Teresa Yamana
type: Person
type: Agent

Sasikiran Kandula
type: Person
type: Agent

Sen Pei
type: Person
type: Agent

Apache 2.0
type: CreativeWork

Apache License Version 2.0
type: CreativeWork

National Institute of General Medical Sciences
type: Organization

MIDAS COORDINATION CENTER
type: Organization
location: PostalAddress
  street address: 5607 Baum Blvd
  address locality: Pittsburgh
  address region: PA
  address country: United States of America
  postal code: 15206

Place
geo: United States
feature code: PCLI

United States
type: GeoShape
address country: US

County
type: Place

Burden and characteristics of COVID-19 in the United States during 2020
type: CreativeWork
description: Detailed method in associated publication
type: Entity
property value: DOI
type: Agent

Initial Simulation of SARS-CoV2 Spread and Intervention Effects in the Continental US
type: CreativeWork
description: Detailed method in associated publication
type: Entity
property value: DOI
type: Agent

Projection of COVID-19 Cases and Deaths in the US as Individual States Re-open May 4, 2020
type: CreativeWork
description: Publication associated with the data
type: Entity
property value: DOI
type: Agent

about-property-structure
type: PropertyValue
description: The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability