Genomic epidemiology of mpox virus
type: Dataset
description: The Genomic Epidemiology of Mpox Dashboard contains phylogenetic trees that can be displayed by clades, sampling dates, genotypes, regions, countries, hosts, genomic composition, etc of the mpox virus. The output is visible with a phylogenic tree, on a map, and with a graph of sequence diversity and is available in multiple languages. The phylogenetic tree (NEXUS, NWK, SVG) and the metadata (TSV) are downloadable in multiple formats. All source code for Nextstrain is freely available under the terms of an open-source license, typically AGPL-3.0 or MIT. Refer to specific projects for details. Screenshots may be used under a CC-BY-4.0 license and attribution to nextstrain.org must be provided.
conforms to: Schema.org
conforms to: Bioschemas Dataset Profile
conforms to: DCMI Metadata Terms
conforms to: Data Catalog Vocabulary
conforms to: DataCite Metadata Schema
conforms to: PROV Ontology
conforms to: PAV Ontology
conforms to: MIDAS Metadata Vocabulary
conforms to: Open Biological and Biomedical Ontology
conforms to: GeoNames Ontology
conforms to: HL7 FHIR
conforms to: SNOMED Clinical Terms
conforms to: Logical Observation Identifiers Names and Codes
conforms to: MIDAS Catalog JSON-LD Schema
included in data catalog: MIDAS Catalog
  type: DataCatalog
  source: https://catalog.midasnetwork.us/
about: viral Infectious disease
about: Viruses
about: molecular
about: mpox
about: infectious disease
about: pathogen
about: host organism
about: data set
about: Homo sapiens
about: sequence collection
about: Zoonotic Infection
about: phylogenetics
about: disease
about: Monkeypox virus
subject: viral Infectious disease
subject: host organism
subject: disease
subject: Zoonotic Infection
subject: Viruses
subject: pathogen
subject: Homo sapiens
subject: Monkeypox virus
subject: phylogenetics
subject: molecular
subject: infectious disease
subject: sequence collection
subject: data set
subject: mpox
access URL: https://nextstrain.org/mpox
landing page: https://nextstrain.org/mpox
endpoint URL: https://nextstrain.org/mpox
abstract: Landing page where users can browse and download dataset files in various formats.
endpoint description: Landing page where users can browse and download dataset files in various formats.
language: English
creator: Nextstrain
keywords: disease
keywords: infectious disease
keywords: mpox
keywords: pathogen
keywords: phylogenetics
keywords: Homo sapiens
keywords: viral Infectious disease
keywords: Viruses
keywords: Monkeypox virus
keywords: sequence collection
keywords: host organism

Schema.org
type: Standard
description: Schema.org vocabulary for structured data on the web
subject: sciences
subject: web
type: generic

Bioschemas Dataset Profile
type: Standard
description: A structured data markup specification for describing datasets in the life sciences, extending schema.org Dataset
subject: bioinformatics
subject: life sciences
subject: structured data
type: metadata schema

DCMI Metadata Terms
type: Standard
description: Dublin Core Metadata Initiative Terms - refined elements for precise resource description
subject: metadata
subject: resource description
subject: interoperability
subject: digital libraries
type: metadata schema

Data Catalog Vocabulary
type: Standard
description: W3C Data Catalog Vocabulary for describing data catalogs
subject: sciences
subject: data management
type: generic

DataCite Metadata Schema
type: Standard
description: DataCite metadata schema for research data citation
subject: research data
subject: data citation
type: domain-specific

PROV Ontology
type: Standard
description: W3C Provenance Ontology for describing provenance information
subject: sciences
subject: epidemiology
type: generic

PAV Ontology
type: Standard
description: Provenance, Authoring and Versioning ontology for metadata about web resources
subject: provenance
subject: versioning
subject: authoring
subject: metadata
type: metadata schema

MIDAS Metadata Vocabulary
type: Standard
description: Custom MIDAS vocabulary for epidemiological data and modeling
subject: epidemiology
subject: public health
subject: infectious diseases
type: domain-specific

Open Biological and Biomedical Ontology
type: Standard
description: OBO Foundry ontologies for life sciences and biomedical research
subject: life sciences
subject: biomedical
subject: epidemiology
type: domain-specific

GeoNames Ontology
type: Standard
description: GeoNames geographical database ontology
subject: geography
subject: spatial data
type: domain-specific

HL7 FHIR
type: Standard
description: Health Level 7 Fast Healthcare Interoperability Resources
subject: healthcare
subject: medical informatics
type: domain-specific

SNOMED Clinical Terms
type: Standard
description: Systematized Nomenclature of Medicine Clinical Terms
subject: healthcare
subject: clinical terminology
type: domain-specific

Logical Observation Identifiers Names and Codes
type: Standard
description: LOINC database for laboratory and clinical observations
subject: healthcare
subject: laboratory
subject: clinical
type: domain-specific

MIDAS Catalog JSON-LD Schema
type: Standard
description: JSON Schema (Draft 2020-12) defining the structure of MIDAS Catalog JSON-LD metadata records
subject: epidemiology
subject: metadata
subject: data validation
type: metadata schema

viral Infectious disease
type: DefinedTerm
description: Any disease caused by a virus.
alternate name: Viruses Infection
type: PropertyValue

Viruses
type: DefinedTerm
description: Minute infectious agents whose genomes are composed of DNA or RNA, but not both. They are characterized by a lack of independent metabolism and the inability to replicate outside living host cells.
alternate name: Viruses
type: PropertyValue

molecular
type: DefinedTerm
alternate name: Molecular

mpox
type: DefinedTerm
description: A viral infectious disease that results in infection of primates, rodents and humans, located in skin, has_material_basis_in Monkeypox virus, which is transmitted by contact with the animal's blood, body fluids, rash, or with the body fluids of a sick person, transmitted by fomites, and transmitted by respiratory droplets. The infection has symptom fever, has symptom muscle ache, has symptom headache, and has symptom lymphadenopathy.
alternate name: Mpox
type: PropertyValue

infectious disease
type: DefinedTerm
description: A disease whose physical basis is an infectious disorder
alternate name: Infectious Disease
type: PropertyValue

pathogen
type: DefinedTerm
description: An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.
alternate name: Pathogen
type: PropertyValue

host organism
type: DefinedTerm
description: An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.
alternate name: Host
type: PropertyValue

data set
type: DefinedTerm
description: A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.
alternate name: Data Set

Homo sapiens
type: DefinedTerm
description: Members of the species Homo sapiens.
alternate name: Homo sapiens
type: PropertyValue

sequence collection
type: DefinedTerm
description: A collection of discontinuous sequences.
alternate name: Sequence Collection
type: PropertyValue

Zoonotic Infection
type: DefinedTerm
description: Infection by an etiologic agent that can be passed between animals and humans.
alternate name: Zoonotic infection
type: PropertyValue

phylogenetics
type: DefinedTerm
description: Construction and/or visualization of phylogenetic trees based on sequence data
alternate name: Phylogenetics
type: PropertyValue

disease
type: DefinedTerm
description: A disease is a disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.
alternate name: Disease
type: PropertyValue

Monkeypox virus
type: DefinedTerm
description: A species of ORTHOPOXVIRUS that is the etiological agent of MPOX, MONKEYPOX.
alternate name: Mpox virus
type: PropertyValue

Earth
type: GeoShape

English
type: Language

Nextstrain
type: Person
type: Agent

datePublished
date: 2026-03-21

datePublished
date: 2022-09-01

Apache 2.0
type: CreativeWork

CC BY 4.0
type: CreativeWork

National Institute of General Medical Sciences
type: Organization

MIDAS COORDINATION CENTER
type: Organization
source: https://midasnetwork.us/
location: PostalAddress
  street address: 5607 Baum Blvd
  address locality: Pittsburgh
  address region: PA
  address country: United States of America
  postal code: 15206

Place
geo: Earth
feature code: AREA

Region
type: Place

Country
type: Place

Nextstrain: real-time tracking of pathogen evolution
type: CreativeWork
description: Associated publication
source: https://academic.oup.com/bioinformatics/article/34/23/4121/5001388
license: CC BY-NC 4.0
type: Entity
property value: DOI
license:
  name: CC BY-NC 4.0
type: Agent
license:
  name: CC BY-NC 4.0

CC BY-NC 4.0
type: CreativeWork

TreeTime: Maximum-likelihood phylodynamic analysis
type: CreativeWork
description: Associated publication
source: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5758920/
license: CC BY 4.0
type: Entity
property value: DOI
license:
  name: CC BY 4.0
type: Agent

DataDownload
source: https://nextstrain.org/mpox
encoding format: nwk
format: nwk
license: CC BY 4.0

DataDownload
source: https://nextstrain.org/mpox
encoding format: tar.gz
format: tar.gz
license: CC BY 4.0

https://www.iana.org/assignments/media-types/text/csv
type: DataDownload
source: https://nextstrain.org/mpox
encoding format: text/csv
format: text/csv
license: CC BY 4.0

DataDownload
source: https://nextstrain.org/mpox
encoding format: fasta
format: fasta
license: CC BY 4.0

https://www.iana.org/assignments/media-types/application/zip
type: DataDownload
source: https://nextstrain.org/mpox
encoding format: application/zip
format: application/zip
license: CC BY 4.0

DataDownload
source: https://nextstrain.org/mpox
encoding format: nexus
format: nexus
license: CC BY 4.0

svg+xml
type: DataDownload
source: https://nextstrain.org/mpox
encoding format: image/svg+xml
format: image/svg+xml
license: CC BY 4.0

tab-separated-values
type: DataDownload
source: https://nextstrain.org/mpox
encoding format: text/tab-separated-values
format: text/tab-separated-values
license: CC BY 4.0

about-property-structure
type: PropertyValue
description: The 'about' property contains mixed types: DefinedTerm objects represent subject matter/topics, while Place objects represent geographical scope or applicability

Place
geo: Earth
feature code: AREA